No question about both being for air dominance. But why would PLAAF need both at the same time? J-50 while being smaller in size, does not appear to be a less expensive one to complement J-36 for a hi-lo combination.
My understanding is risk management as well as expense. Assuming that both use WS-15 in service and later switch to same TBCC engine (for logistics) there will be massive saving for Shenyang plane in terms of engine alone, not to mention maintenance and other costs. You can also store a lot more SAC aircraft within hangars (probably can get away with modified flanker and J-20 hangars) while same cannot be said for the J-36. Finally, there is significant risk with putting everything in the J-36 basket because for the first time in aviation history China is the one defining air combat philosophy. It may be too radical for today’s technology, and until we test the theories out in practice there is no real way of knowing for sure. Always better to have an advanced but less radical option to fall back on.